YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN5_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNHTALPQ DERLPHYLRD EDPFASKLSW EADLVAGFYL TIIGILSTFG NGYVLYMSSR  60
   61 RKKKLRPAEI MTINLAVCDL GISVVGKPFT IISCFCHRWV FGWFGCRWYG WAGFFFGCGS 120
  121 LITMTAVSLD RYLKICYLSY GVWLKRKHAY ICLAVIWAYA SFWTTMPLVG LGDYAPEPFG 180
  181 TSCTLDWWLA QASGGGQVFI LSILFFCLLL PTAVIVFSYA KIIAKVKSSS KEVAHFDSRI 240
  241 HSSHVLEVKL TKVAMLICAG FLIAWIPYAV VSVWSAFGRP DSIPIQLSVV PTLLAKSAAM 300
  301 YNPIIYQVID YRFACCQAGG LRGTKKKSLE DFRLHTVTAV RKSSAVLEIH PESSSRFTSA 360
  361 HVMDGESHSN DGDCGKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.97
Transmembrane Helix	35	56	0.93
Cytoplasmic	57	71	0.88
Transmembrane Helix	72	92	0.86
Non-Cytoplasmic	93	107	0.73
Transmembrane Helix	108	129	0.92
Cytoplasmic	130	148	0.91
Transmembrane Helix	149	171	0.89
Non-Cytoplasmic	172	196	0.94
Transmembrane Helix	197	219	0.93
Cytoplasmic	220	252	0.93
Transmembrane Helix	253	277	0.83
Non-Cytoplasmic	278	377	0.76