YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2555191, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGRAPWVV ALLVNLMRLD SFMIEGRDSP ENFVIQAKAD CYFTNGTEKV HLLVRFIFNL  60
   61 EEYLHFDSDL GMFVALTELG EPDADQWNKR LDLLETSRAA VNMVCRQKYK LGAPFTVERN 120
  121 VPPEVTVYPE RTPLLQQHNL LLCSVTGFYP GDISVKWFRN GQEERSGVMS TGLVRNGDWT 180
  181 FQTTVMLEMI PELGDIYSCL VEHPGLLRPV SVAWMAQSEY SWKKILSGAA VFLLGLIVFL 240
  241 VGVVIHLKAQ KASVETQPGN EASRESLHSQ P

Type	Start	End	Confidence
Cytoplasmic	1	224	0.57
Transmembrane Helix	225	247	0.90
Non-Cytoplasmic	248	271	0.55