YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28201980, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHMGMNHME MHHHMGMYHT DDNITMPPHH HPTTSASHSH GGGDSMMMMP MTFYFDFKNV  60
   61 NLLFSGLVIN TPGEMAGAFV AVFLLAMFYE GLKIAREGLL RKSQVSIRYN SMPVPGPNGT 120
  121 ILMETHKTVG QQMLSFPHLL QTVLHIIQVV ISYFLMLIFM TYNGYLCIAV AAGAGTGYFL 180
  181 FSWKKAVVVD ITEHCH

Type	Start	End	Confidence
Cytoplasmic	1	35	0.66
Transmembrane Helix	36	55	0.39
Non-Cytoplasmic	56	70	0.55
Transmembrane Helix	71	92	0.78
Cytoplasmic	93	137	0.77
Transmembrane Helix	138	157	0.75
Non-Cytoplasmic	158	161	0.45
Transmembrane Helix	162	182	0.82
Cytoplasmic	183	196	0.69