YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7243708, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFTTVIFFV MILDFYMDSV CSVKMDVSKC ARYGSFPIFI SALLFGNFWT HPITDQLRAM  60
   61 NRAAHQESTE HVLSGGVVVS AVFFILSANI PSSPSKRGQK GTLIGYSPEG TPLYHFMGDA 120
  121 FQHSSQSVPR FIKDSLKQVL EESDSRQIFY FLCLNLLFTF VELFYGALTN SLGLISDGFH 180
  181 MLFDCSALVM GLFAALMSRW KATRIFSYGY GRIEILSGFI NGLFLIVIAF FVFMESVARL 240
  241 IDPPELDTNM LTPVSVGGLI VNLIGICAFS HAHSHGHGAS QGNCHSDHGH SHHAHGHGHD 300
  301 HGHSHGFSGG GMNANMRGVF LHVLADTLGS IGVIVSTVLI EQFGWFIADP LCSLFIAVLI 360
  361 FLSVIPLIKD ACQVLLLRLP PDHEKELHIA LEKIQKIEGL ISYRDPHFWR HSASIVAGTI 420
  421 HIQVTSEVLE QRIVQQVTGI LKDAGVNNLT IQVEKEAYFQ HMSGLSTGFH DVLAMTKQME 480
  481 SLKYCKDGTY IM

Type	Start	End	Confidence
Cytoplasmic	1	32	0.77
Transmembrane Helix	33	53	0.90
Non-Cytoplasmic	54	70	0.93
Transmembrane Helix	71	90	0.94
Cytoplasmic	91	147	0.97
Transmembrane Helix	148	168	0.94
Non-Cytoplasmic	169	178	0.80
Transmembrane Helix	179	198	0.94
Cytoplasmic	199	214	0.80
Transmembrane Helix	215	234	0.92
Non-Cytoplasmic	235	249	0.85
Transmembrane Helix	250	272	0.88
Cytoplasmic	273	317	0.97
Transmembrane Helix	318	340	0.91
Non-Cytoplasmic	341	345	0.86
Transmembrane Helix	346	368	0.91
Cytoplasmic	369	492	0.92