YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LNP_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLFSRWRA KPSTVEVLEN IDKEIQALEE FREKNQRLQK LWVGRLIIYS SILYLFTCLI  60
   61 VYLWYLPDEF TARLVMTLPF FAFPLIIWTL RTVLIFFFSK RTERNNEALD DLKSQKKKIL 120
  121 EEVMEKETYK TAKLILERFD PDSKKAKEFE PPSAGAAVTA KPGQEIRQRT AAQRNLSPAP 180
  181 ASSSQGPPPQ GPVSPGPAKD ASAPGGPPER TVAPALPRRL GSPATSVPGM GLHPPGPPLA 240
  241 RPILPRERGA LDRIVEYLVG DGPQNRYALI CQQCFSHNGM ALKEEFEYIA FRCAYCFFLN 300
  301 PARKTRPQAP RLPEFSFEKR QAVEGSSSTG PTLLESVPSA ESQLIEDSLE EQDVLDNSTE 360
  361 QRDDKIPVTE QTSQVIEKTS GPEEPAENQE ETENEETSTN EAKSPVLRAD SVPNLEPSEE 420
  421 SLVTK

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	66	0.89
Non-Cytoplasmic	67	73	0.85
Transmembrane Helix	74	95	0.89
Cytoplasmic	96	425	0.95