YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR107_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSAEGILL CVVTSEAVLG VLGDTYIALF NCMDYAKNKK LSKIGFILIG LAISRIGVVW  60
   61 IIILQGYIQV FFPHMLTSGN ITEYITYIWV FLNHLSVWFV TNLNILYFLK IANFSNSVFL 120
  121 WLKRRVNAVF IFLSGCLLTS WLLCFPQMTK ILQNSKMHQR NTSWVHQRKN YFLINQSVTN 180
  181 LGIFFFIIVS LITCFLLIVF LWRHVRQMHS DVSGFRDHST KVHVKAMKFL ISFMVFFILH 240
  241 FVGLSIEVLC FILPQNKLLF ITGLTATCLY PCGHSIIVIL GNKQLKQASL KALQQLKCCE 300
  301 TKGNFRVK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.51
Transmembrane Helix	8	28	0.53
Cytoplasmic	29	43	0.88
Transmembrane Helix	44	64	0.93
Non-Cytoplasmic	65	84	0.86
Transmembrane Helix	85	108	0.87
Cytoplasmic	109	125	0.89
Transmembrane Helix	126	145	0.93
Non-Cytoplasmic	146	180	0.93
Transmembrane Helix	181	202	0.94
Cytoplasmic	203	228	0.87
Transmembrane Helix	229	251	0.85
Non-Cytoplasmic	252	258	0.82
Transmembrane Helix	259	281	0.89
Cytoplasmic	282	308	0.94