YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYVN1_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.61
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	44	0.84
Transmembrane Helix	45	66	0.77
Cytoplasmic	67	80	0.76
Transmembrane Helix	81	95	0.28
Non-Cytoplasmic	96	100	0.36
Transmembrane Helix	101	120	0.77
Cytoplasmic	121	135	0.51
Transmembrane Helix	136	160	0.84
Non-Cytoplasmic	161	171	0.45
Transmembrane Helix	172	194	0.87
Cytoplasmic	195	212	0.47
Transmembrane Helix	213	240	0.70
Non-Cytoplasmic	241	612	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTAVMMAA SLALTGAVVA HAYYLKHQFY PTVVYLTKSS PSMAVLYIQA FVLVFLLGKV  60
   61 MGKVFFGQLR AAEMEHLLER SWYAVTETCL AFTVFRDDFS PRFVALFTLL LFLKCFHWLA 120
  121 EDRVDFMERS PNISWLFHCR IVSLMFLLGI LDFLFVSHAY HSILTRGASV QLVFGFEYAI 180
  181 LMTMVLTIFI KYVLHSVDLQ SENPWDNKAV YMLYTELFTG FIKVLLYMAF MTIMIKVHTF 240
  241 PLFAIRPMYL AMRQFKKAVT DAIMSRRAIR NMNTLYPDAT PEELQAVDNV CIICREEMVT 300
  301 GAKRLPCNHI FHTSCLRSWF QRQQTCPTCR MDVLRASLPA QSPPPPEPAD QGPPPAPHPQ 360
  361 PLLPQPPNFP QGLLPPFPPG MFPLWPPMGP FPPVPPPPSS GEAAAPPPTS TAVSRPSGAA 420
  421 TTTAAGTSTS APAPGSVPGP EAGPAPGFPF PPPWMGMPLP PPFAFPPMPV PPAGFAGLTP 480
  481 EELRALEGHE RQHLEARLQS LRNIHTLLDA AMLQINQYLT VLASLGPPRP ATSVNPTEET 540
  541 ASTVVSAAPS TSAPSSEAPT PSPGASPPIP EAEKPPAPES VGIVEELPED GEPDAAELRR 600
  601 RRLQKLESPV AH