YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148921986, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	105	0.98
Transmembrane Helix	106	125	0.93
Cytoplasmic	126	134	0.83
Transmembrane Helix	135	154	0.92
Non-Cytoplasmic	155	168	0.81
Transmembrane Helix	169	188	0.90
Cytoplasmic	189	194	0.79
Transmembrane Helix	195	214	0.92
Non-Cytoplasmic	215	223	0.68
Transmembrane Helix	224	243	0.94
Cytoplasmic	244	255	0.80
Transmembrane Helix	256	274	0.89
Non-Cytoplasmic	275	283	0.69
Transmembrane Helix	284	302	0.78
Cytoplasmic	303	320	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRTAPLLL LTLAVGLAGG SQGDREPVYR DCVLRCEERN CSGDALKHFR SRQPIYMSLA  60
   61 GWTCRDDCKY ECMWFTVGLY LQEGHRVPQF HGKWPFSRFL FIQEPASAVA SLLNGLASLV 120
  121 MLCRYRASVP ASSPMYHTCM AFAWVSLNAW FWSTVFHTRD TDLTEKMDYF CASAVILHSV 180
  181 YLCCVRTVGL QHPSVASAFG ALLLLLLTGH ISYLSLVHFD YGYNMMANVA IGLVNLAWWL 240
  241 VWCLRNRQRL PHTRRCMVVV VLLQGLSLLE LLDFPPLFWV LDAHAIWHIS TIPVHTLFFR 300
  301 FLEDDSLYLL KESGAMFKLD