YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71892412, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQQRTVLI SGCSSGIGLE LALQLAHDPR QRYQVVATMR DLGKKEPLEA AAGEALGKTL  60
   61 SVVQLDVCND ESVTDCLSHI EGGQVDVLVN NAGVGLVGPL EGLSLATMQS VFNTNFFGAV 120
  121 RLVKAVLPGM KRRRQGHIVV VSSVMGLQGV MFNDVYAASK FALEGFFESL AIQLRQFNIF 180
  181 ISMVEPGPVT TDFEGKLLAQ VSKAEFPDTD PDTLGYFRDL YLPASRELFR SVGQSPRDVA 240
  241 QVIAKVIGTT RPPLRRQTNT RYLPLTALKA MDPSGSLYVK TAHRLLFRWP HLLNLGLRCL 300
  301 ACGCLPTRVW PRQTEQN

Type	Start	End	Confidence
Signal Peptide	1	22	0.44
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	317	0.88