YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94378174
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAQSSRYE LQRWHRRGLR AVGSAWLRGS RGLPLALVRD RRAPAPGTQC GRALSLSAAA  60
   61 VVNSAPRPLQ PYLRLMRLDK PIRTWLLYLP CTWSFGLAAD PGCFPDMLSL FCTGAILMRG 120
  121 AGCTINDMWD RDFDKKVTRT ASRPIAAGDI STFQSFVFLG GQLTLALGVL LCLNYYSIAM 180
  181 GAASLLLVIT YPLMKRITFW PQLALGLTFN WGVLLGWSAV KGSCDPAVCL PLYFSGVMWT 240
  241 LIYDTIYAHQ DKKDDALIGL KSTALLFQEN TRQWLSGFGV AMVAALSLAG ANNGQTVPYY 300
  301 AAVAAVGAHL AHQIYTVDIH RAEDCWAKFT SNRTVGMFLF LGIVLGNLCK EKTEEAKDAE 360
  361 AVRVGSEQTS

Type	Start	End	Confidence
Cytoplasmic	1	83	0.92
Transmembrane Helix	84	102	0.83
Non-Cytoplasmic	103	106	0.67
Transmembrane Helix	107	129	0.49
Cytoplasmic	130	144	0.52
Transmembrane Helix	145	170	0.59
Non-Cytoplasmic	171	171	0.35
Transmembrane Helix	172	191	0.81
Cytoplasmic	192	198	0.74
Transmembrane Helix	199	220	0.83
Non-Cytoplasmic	221	226	0.73
Transmembrane Helix	227	247	0.76
Cytoplasmic	248	270	0.86
Transmembrane Helix	271	291	0.82
Non-Cytoplasmic	292	296	0.72
Transmembrane Helix	297	316	0.60
Cytoplasmic	317	370	0.61