YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNKI_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEEPPEAR RCCPEALGKA RGCCPEALGK LLPGLCFLCC LVTYALVGAA LFSAVEGRPD  60
   61 PEAEENPELK KFLDDLCNIL KCNLTVVEGS RKNLCEHLQH LKPQWLKAPQ DWSFLSALFF 120
  121 CCTVFSTVGY GHMYPVTRLG KFLCMLYALF GIPLMFLVLT DIGDILATIL SRAYSRFQAL 180
  181 LCLPHDIFKW RSLPLCRKQP DSKPVEEAIP QIVIDAGVDE LLNPQPSKDP PSPSCNVELF 240
  241 ERLVAREKKN KLQPPTRPVE RSNSCPELVL GRLSCSILSN LDEVGQQVER LDIPLPVIAL 300
  301 VVFAYISCAA AILPFWETEL GFEDAFYFCF VTLTTIGFGD IVLVHPHFFL FFSIYIIVGM 360
  361 EILFIAFKLM QNRLLHTYKT LMLFVCQREV SLPW

Type	Start	End	Confidence
Cytoplasmic	1	30	0.89
Transmembrane Helix	31	52	0.82
Non-Cytoplasmic	53	112	0.82
Transmembrane Helix	113	134	0.92
Cytoplasmic	135	142	0.71
Transmembrane Helix	143	167	0.83
Non-Cytoplasmic	168	294	0.73
Transmembrane Helix	295	316	0.93
Cytoplasmic	317	324	0.66
Transmembrane Helix	325	344	0.76
Non-Cytoplasmic	345	348	0.66
Transmembrane Helix	349	370	0.88
Cytoplasmic	371	394	0.91