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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: rn-PE
Protein type: Transmembrane
Type Confidence: 0.74
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMHGTWYKG PQLAHHPHSN PHNSSHGHSD YHQFRSYPSF VVTPYHDGHV QGPATPTPCT  60
   61 APPTPCNGPV PVSVPVSIPV CHTGGQGSPV IVESSFAIAA AAAAAAAAVA VGGSSATPLL 120
  121 PSPPIKIEQV FGEPSSLGAV VEDYALGLDC PVEHTFRKPH NNNGYSWSTG NNNEVVSHSS 180
  181 NGHTNNHPTT PPTPPNEASA TQATSVSAIN LNQAQPASQT RSNFGSSIKS PPSEPDAVTA 240
  241 ATCKSQENNS GQNPTPNSLS DHNPAHNLNS NSTAAAVAAA AAAAAAANMP IGGVQGQNPT 300
  301 QGLVHWMSAV MAEHMTGQTH HDPGAVGMHY MWNGNVDHAK DISDYNLWPP TPRSHQHASE 360
  361 HHPMSLKQEY EAKMNDHHHN NLQKGHFLDD NRLEHHAVTG QGGLGLGASN GVGGGGGGAS 420
  421 VVGNSSLGAS SHHAVAAAHH HNQAVAAASA AALLVVPQPI NASKMGGPGG VSSVAGGHAT 480
  481 GGGSGRKYQC KMCPQIFSSK ADLQLHTQIH MREAKPYKCT QCSKAFANSS YLSQHTRIHL 540
  541 GIKPYRCEIC QRKFTQLSHL QQHIRTHTGD KPYKCRHPGC QKAFSQLSNL QSHSRCHQTD 600
  601 KPFKCNSCYK CFSDEPSLLE HIPKHKESKH LKTHICQYCG KSYTQETYLT KHMQKHAERT 660
  661 DKRPPIVPGS AAAIAAAAAA AAGGSANPAN GPPPPPNPAQ HQRNNLGLPP VSIAPSDNGY 720
  721 WPKVSPDSAA AANAMEVMHQ QQQQQQQQQQ QQQQQQQQQQ QQAHHHHPQH GVPPQQHVPP 780
  781 QQQQQQQQQQ QHHHPQQQPP PQHSMEAHYA QPTAPNGSQS NGHGAELQPH HRMPDPVRED 840
  841 IASTPSAVGP YDAASITKTT SNSAFTPINS MPPHLNSLSH HPMAQRPYLY DAISFPNKNV 900
  901 NQNNANAFPN QLISLHQIRN YAHQPAGLMA GEHLLGVSVG PGKDKG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle