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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CG32000-PA, CG32...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPHNDSKDS KPCIGLLNPD QEDQMKVCGY RRSLMRTGFC WACIFLTGGL LRLVLHWWRH  60
   61 LYLYATCSQC SLEEAEQVLV TEDYQGKHKM YHVKQIQVLT SSNLKTLLEK EQQSIERTHI 120
  121 ECDHVENVLQ LSVHFTSAQF KKCSSIRIFR CKQLVYAWNN NTNRFQRING LDLNIPCSYY 180
  181 HQQRGLPVHE QISRRIVFGD NEITVPLRDF KTLLFLEVLN PFYVFQLFSV ILWFTYDYYY 240
  241 YACVILLMSV FGITVSVLQT KKNQDVLQKT VYNTGNAWVV DHKGLSKELP TRAIVPGDII 300
  301 EIPSSGCTLH CDAILISGNC ILDESMLTGE SVPVTKTPLP SKRDMIFDKT EHARHTLFCG 360
  361 TKVIQTRYIG SKKVLAFVIN TGNITAKGEL IRSILYPPPV DYKFEQDSYK FIQFLAIIAC 420
  421 VGFIYTLVTK ILRGTDPVKI AVESLDLITI VVPPALPAAM TVGRFYAQKR LKTSEIFCIS 480
  481 PRSINVAGSI NCCCFDKTGT LTEDGLDMWG VVPKSSTNQF QIPLKSVDRL PFDHFLFGMV 540
  541 TCHSITILNG RMMGDPLDLK MFESTGWELE DSNNIPDTEK YGILYPTILR QPRGGLSGMA 600
  601 ETESGSKNEI KRQSSVDDLL ATVGISPSQK NFDHGIVREF PFTSALQRMS VVTRCLSDQV 660
  661 FNVYCKGSPE MLKKLCKPQS LPDNYSQQLS EFAKKGYRII AIAFKALSHK MNYTKVQRLS 720
  721 REEVENNMEF LGFVILENRL KPDTTKVINA LNAAKIRTIM ITGDNILTAI SVARDCGIVS 780
  781 PSQSVITVHA DPIGDSANIQ TNTGTECNFD NSSDKHYKLH YTLDLGSKTS RAYLFKSCFN 840
  841 SNLFDPETPE FTAQVGKTIF HMESTNSLVN ESTSSYAESG LPTSDSLASV KTIDTWTHND 900
  901 AELGIKHTPD ESWRRQECIF AMDGKTWQIV KDYFPEEMEI LLTRGSIYAR MSPDQKQALV 960
  961 IELQNLDYCV AMCGDGANDC GALKVAHAGI SLSETEASIA SPFTSRNPTI SAVLKVIKEG1020
 1021 RAALVTSFGI FKYMAAYSLV QFISVMILYS IDSNLTDKQY LYVDLGLISI FAFFFGKTES1080
 1081 FDGMLVEQVP LSSLISSTPL ASLLLHLTVV TAFQVTCWVH LHQQPWFKAF EPADEDHLGC1140
 1141 FENYTMFCIS SFQYIILAFV FSKGAPYRKP LWSNWPLCLA FIVNLCIIVY LVLYPSDWVA1200
 1201 SFFQLIVPPT MRFRYVMLAY GAASFICHIF VESFLVEYLV FKKYQVKREK NWVTSKQKYM1260
 1261 RLEHDISNIK NWPPITEVYE PNNLIDCETE QPTYVSLHAE QNHDTQLGKF PGFC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle