YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2177-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLCSLKLSW AIMAEETIIL ILLVLVMLVG SYLAGSIPML MKLSEEKLKC VTVLGAGLLV  60
   61 GTALVVIIPE GIRSLYVGSG QSQKRTSVPE QPDYSQTIGL SLVLGFVFMM LVDISQRKSN 120
  121 VGSNKKNNAT LTLGLVVHAA ADGVALGAAA TTSHQDVEII VFLAIMLHKA PAAFGLVTFL 180
  181 LHEKVDRHQI RRHLVLFSLS APLMTILTYF GIGQEQKDTL NSVNATGIAM LFSAGTFLYV 240
  241 ATVHVLPELT QGGFTKSDQH DYCLLEESRG VATNDINGSN SIQALKYSEL VILICGALLP 300
  301 LIITFGHNH

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.91
Transmembrane Helix	18	40	0.89
Cytoplasmic	41	49	0.88
Transmembrane Helix	50	72	0.89
Non-Cytoplasmic	73	95	0.93
Transmembrane Helix	96	115	0.92
Cytoplasmic	116	128	0.94
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	158	0.86
Transmembrane Helix	159	181	0.94
Cytoplasmic	182	192	0.89
Transmembrane Helix	193	213	0.93
Non-Cytoplasmic	214	224	0.85
Transmembrane Helix	225	246	0.88
Cytoplasmic	247	286	0.95
Transmembrane Helix	287	307	0.83
Non-Cytoplasmic	308	309	0.83