YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8083-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.96
Transmembrane Helix	58	75	0.94
Non-Cytoplasmic	76	100	0.87
Transmembrane Helix	101	123	0.91
Cytoplasmic	124	148	0.94
Transmembrane Helix	149	170	0.92
Non-Cytoplasmic	171	177	0.84
Transmembrane Helix	178	197	0.90
Cytoplasmic	198	203	0.82
Transmembrane Helix	204	224	0.80
Non-Cytoplasmic	225	261	0.73
Transmembrane Helix	262	285	0.90
Cytoplasmic	286	295	0.66
Transmembrane Helix	296	319	0.71
Non-Cytoplasmic	320	340	0.51
Transmembrane Helix	341	375	0.71
Cytoplasmic	376	421	0.77
Transmembrane Helix	422	445	0.84
Non-Cytoplasmic	446	519	0.82
Transmembrane Helix	520	541	0.90
Cytoplasmic	542	554	0.75
Transmembrane Helix	555	578	0.90
Non-Cytoplasmic	579	602	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAESSKGAI NNGYELDHEL DIRDSEEFTE HPLDDTSEVA NKKGYFEKNP KVARLVRISI  60
   61 YVLLHLCVVG YFSYATYHYH DITNYECYWK DNPLCGINFC TGYGMLLLLL GFIYLGLFYY 120
  121 YVFKPMVGHS LHRNYIKPFS KKWHNFSRTR VVSLASIALL LALLAIFVYF ECRDETQKLV 180
  181 SLVAPCFFIL CGYVFSTNRR AINWRIVITG ITCQFLLGIF CIRWEVGRKI FECLGNKVAT 240
  241 FLGYATDGAE FVFGDFLVNN NVFAFAILPV IFFFSFFISI LYYMGTMQWV VIKLGWILQQ 300
  301 ILGTTVCESV TAAANIFLGM SESPLLIRPY INKLTKSEIH SIMVSGFATV SGTVLAAYLS 360
  361 FGASAAHLIT SSVMAAPATL AISKLYMPET EESQTSSDSI ELEKSQDSSL LDAASSGASN 420
  421 AVPIVLGIIA NIVAFVAFIA FLNGLVSWFG YLVGLEQIDF EWIFSKLFIP LVWAMGVPKE 480
  481 DCDIIAKVVA TKTIINEFVA YERLGQYIEN NDITARSAGI ATFAICGFAN PSSLGILIGS 540
  541 LSAMAPHRRS TITAVAFRAF VVGSIVCFVS ASFAGILIQE DDERANYNRI FEKLGRKNVT 600
  601 QF