YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1407-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNDDHRRRK TPCGFCMAVF KWIPVLFITA VIAWSYYAYV VELCIRNSEN RIGMIFMLLF  60
   61 YHLFLTLFMW SYWRTIMTSV GRIPDQWRIP DEEVSRLFRA DSPDTQKRIL NNFARDLPVT 120
  121 NRTMNGSVRF CEKCKIIKPD RAHHCSVCSC CVLKMDHHCP WVNNCVNFYN YKYFVLFLGY 180
  181 ALVYCLYVAF TSLHDFVEFW KVGAGQLNAS GMGRFHILFL FFIAIMFAIS LVSLFGYHIY 240
  241 LVLVNRTTLE SFRAPIFRVG GPDKNGYNLG RYANFCEVFG DDWQYWFLPV FSSRGDGYSY 300
  301 PTSSDQSRVS TSSPTQRYDA MGDTTTSRLD GNPTDKLIGA SPLDTTNHHH NQSPHQVRST 360
  361 SVLPTQLLQI QPPSTCRDEL NERQQKLANG QSLDCSTPAA MSSPDERGVN GAAVYIEMIG 420
  421 DHPLTSADPA KGFPRPPNGD LPV

Type	Start	End	Confidence
Cytoplasmic	1	17	0.88
Transmembrane Helix	18	38	0.92
Non-Cytoplasmic	39	51	0.90
Transmembrane Helix	52	73	0.91
Cytoplasmic	74	172	0.96
Transmembrane Helix	173	194	0.84
Non-Cytoplasmic	195	216	0.84
Transmembrane Helix	217	241	0.90
Cytoplasmic	242	443	0.91