YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8850-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.97
Transmembrane Helix	64	85	0.88
Non-Cytoplasmic	86	93	0.76
Transmembrane Helix	94	112	0.92
Cytoplasmic	113	140	0.80
Transmembrane Helix	141	164	0.84
Non-Cytoplasmic	165	228	0.95
Transmembrane Helix	229	248	0.93
Cytoplasmic	249	258	0.80
Transmembrane Helix	259	279	0.93
Non-Cytoplasmic	280	302	0.88
Transmembrane Helix	303	327	0.88
Cytoplasmic	328	337	0.95
Transmembrane Helix	338	360	0.90
Non-Cytoplasmic	361	401	0.92
Transmembrane Helix	402	425	0.87
Cytoplasmic	426	436	0.80
Transmembrane Helix	437	457	0.95
Non-Cytoplasmic	458	469	0.83
Transmembrane Helix	470	493	0.90
Cytoplasmic	494	509	0.98
Transmembrane Helix	510	533	0.90
Non-Cytoplasmic	534	550	0.91
Transmembrane Helix	551	573	0.89
Cytoplasmic	574	629	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDDAEYQKL RRNMQGAQGS REGHPGSNDG ISTVIYSAEG EELTINCEAE SESSGQRDQW  60
   61 SRGVEFLFSC IALSVGLGNV WRFPFIALEN GGGAFLIPYV IVLLLIGRPV YYLEVIIGQF 120
  121 SSRGCIRAFD MAPIMRGIAY GQVYSTALAT TYYACIMALT IRYLVASFSE VLPWTYCLVE 180
  181 WGKSCVATGA TAANDSSIVQ GVSSAELFFT QTVLREPESL DDNGLGTPSW DLVLCLLATW 240
  241 VIIGTILSKG IRSSGKASYF LALFPYVIMI VLLIRAVTLP GAWQGIVYFL KPQWSQLLNP 300
  301 HVWYAAITQM FFSLAICFGT LVMYASFNDF NKNVHKDVII ITTIDSLTSI LAGCIIFGIL 360
  361 GNLAFETNTK DISQVVKGGA GLAFISYPEA IAKFKYLPQL FAVLFFFMLL VLGIGSNIGM 420
  421 ASAVVNVVKD RFTHLPHWLL AVSASIIGFL CGLVYMTPGG QFVLNLVDFY GCTFIALVLA 480
  481 IAELLAVGWI YGVKRICSDI EFMLNVKTSF YWRICWAIVA PGLMFLVLVY MLFSYEPLTY 540
  541 RGVQYPPVYY MAGWIIWGLG VLQLPFWALV TIYQQPGKTF GSKFGLAMQP TANWGPLQTQ 600
  601 KFEAYIIHRK READFKSPRG GYLFDNIFG