YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ETHR-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPQIPSYIR TTAMFFCIVI MLLGVVGNVM VPIVIVKTKD MRNSTNIFLT NLSIADLLVL  60
   61 LVCTPTVLVE VNTRPETWVL GHEMCKAVPF VELTVAHASV LTILAISFER YYAICEPLKA 120
  121 GYVCTKGRAI LICVLAWGIA ALFTSPIIAI STYSVEPYGD GTDAPVCTTA ADGFWSIFYF 180
  181 VGCITVFFFL PFGILVLLYA AIAYKLLRPN NAFHRPTSPQ PQQPSGGATS GSSQVPSTKG 240
  241 NSHQQSNGMR KHRKQVIFML VAVVSSFFVC LLPFRAFTLW VILASAEDVE GLGIAGYYNL 300
  301 LYFSRFMLYL NSAMNPILYN LMSSKFRSGF WRLLLTCLGQ RPHHHHRHHY HQRQHPTAGG 360
  361 SGRNASTRQE QDAEEGAALA GTTSARHPRR TLRREATFLI NSISTSSGTD RTTSSSAWRS 420
  421 NSLSISGLSE RERGILGAAI IGTTAATVTT ACLQERRASK I

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.85
Transmembrane Helix	12	36	0.89
Cytoplasmic	37	46	0.86
Transmembrane Helix	47	69	0.88
Non-Cytoplasmic	70	89	0.85
Transmembrane Helix	90	108	0.85
Cytoplasmic	109	128	0.83
Transmembrane Helix	129	150	0.93
Non-Cytoplasmic	151	177	0.90
Transmembrane Helix	178	202	0.89
Cytoplasmic	203	255	0.98
Transmembrane Helix	256	277	0.94
Non-Cytoplasmic	278	300	0.86
Transmembrane Helix	301	322	0.82
Cytoplasmic	323	461	0.77