YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Tim17b2-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEYSREPCP HRIVDDCGGA FIMGCVGGGL FQGLKGFRNA PQGLGRRVAG SVAAIKTKSP  60
   61 VIGGSFAAWG AVFSIVDCSL VHFRQKEDPW NSIVSGAVTG GILASRNGAA AMAGSAIIGG 120
  121 VLLSMIEGLG IFFTRFAAEQ FRNREPHIMP DANEGYGDFN SSGFGFPGIP QQNIWTRLAL 180
  181 REKHSNIIMW PGQDVWELEN WGIQGVAPTR IVRAPVRPAH TCVTSTASPV CFPSSAVGVP 240
  241 TYVSGPGELP HGKTESPAKS KLIVEERSRS LAWTRTRRFT APFWSGKNVD NPLSLCSKCS 300
  301 ISTHLAEIMT AGGSNSQQPV ASFPQSMPRQ QQKQQQPRRL QQQHGIIADG NAPDAGYHGS 360
  361 LLQLVVFARL RLGRWLPLKR NRTESQFNPA NKSRSILTHY SPLCKCNNRS QSKVQRQPDS 420
  421 RFSPAGSSLD ICKKLQSCLQ LPLVMRQLLD KQFLPLAPSS NFKIKISSSG SSGKNLDL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.77
Transmembrane Helix	13	34	0.67
Non-Cytoplasmic	35	60	0.58
Transmembrane Helix	61	83	0.74
Cytoplasmic	84	101	0.47
Transmembrane Helix	102	134	0.73
Non-Cytoplasmic	135	478	0.54