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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nAcRalpha-34E-PD...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNAQLKLTE VDDDELWLAV RLAHCSSNIS SSSSTRTTSS NKRHNQQLTT LQPRSLSTKH  60
   61 HSNIASEQHN SQQQEPASKD EDVANHGRSN DQQTHLQQLD SSNMLSPKTA AAATAAGDEA 120
  121 TTQQPTNIRL CARKRQRLRR RRKRKPATPN ETDIKKQQQL SMPPFKTRKS TDTYSTPAAI 180
  181 TSCPTATYMQ CRASDNEFSI PISRHDRVST ATFAWVLHVL QVLLVSLQQW QLHVQQRSVL 240
  241 LFRRIAASTI AFISYLGSFA AQLRSSSSSS SNSSNSGNSS STQILNGLNK HSWIFLLIYL 300
  301 NLSAKVCLAG YHEKRLLHDL LDPYNTLERP VLNESDPLQL SFGLTLMQII DVDEKNQLLV 360
  361 TNVWLKLEWN DMNLRWNTSD YGGVKDLRIP PHRIWKPDVL MYNSADEGFD GTYQTNVVVR 420
  421 NNGSCLYVPP GIFKSTCKID ITWFPFDDQR CEMKFGSWTY DGFQLDLQLQ DETGGDISSY 480
  481 VLNGEWELLG VPGKRNEIYY NCCPEPYIDI TFAIIIRRRT LYYFFNLIIP CVLIASMALL 540
  541 GFTLPPDSGE KLSLGVTILL SLTVFLNMVA ETMPATSDAV PLLGTYFNCI MFMVASSVVS 600
  601 TILILNYHHR NADTHEMSEW IRIVFLCWLP WILRMSRPGR PLILEFPTTP CSDTSSERKH 660
  661 QILSDVELKE RSSKSLLANV LDIDDDFRHN CRPMTPGGTL PHNPAFYRTV YGQGDDGSIG 720
  721 PIGSTRMPDA VTHHTCIKSS TEYELGLILK EIRFITDQLR KDDECNDIAN DWKFAAMVVD 780
  781 RLCLIIFTMF TILATIAVLL SAPHIIVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle