YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oatp33Ea-PA, FBp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.85
Transmembrane Helix	37	56	0.92
Non-Cytoplasmic	57	73	0.72
Transmembrane Helix	74	95	0.81
Cytoplasmic	96	102	0.92
Transmembrane Helix	103	125	0.93
Non-Cytoplasmic	126	182	0.96
Transmembrane Helix	183	204	0.88
Cytoplasmic	205	218	0.91
Transmembrane Helix	219	243	0.83
Non-Cytoplasmic	244	265	0.89
Transmembrane Helix	266	287	0.94
Cytoplasmic	288	362	0.98
Transmembrane Helix	363	385	0.93
Non-Cytoplasmic	386	401	0.88
Transmembrane Helix	402	423	0.94
Cytoplasmic	424	432	0.94
Transmembrane Helix	433	455	0.87
Non-Cytoplasmic	456	597	0.91
Transmembrane Helix	598	620	0.75
Cytoplasmic	621	633	0.74
Transmembrane Helix	634	656	0.88
Non-Cytoplasmic	657	687	0.79
Transmembrane Helix	688	707	0.90
Cytoplasmic	708	745	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVKRRDPN RPPGHYLCGM ANWHPPWLQK YATTKMFMGV YGLLGTIQAM SYMYFIVTLT  60
   61 TLEKRFKIPS QTTGIILSGN EISQIMLSLI LSYIGGQRNR PRWIAWGIVF CGLSCYILVL 120
  121 PHFIYGAGHE VLQFTKEYQD SLLNGTTGSD HSFQNISSVK TERLCGVDKT EDDCDDLFSY 180
  181 VPLVLIFLSQ FVLGVGNTLY YSLGQTYLDD NTKKTNTPLM LAVAMALRMI GPVVGFFFGF 240
  241 ISLNTFIDPT KTPLIDSKDP RWLGAWWLGW VILGTLMCLF SGLIGLFPKQ LPKVNASRTN 300
  301 SHLPLALRQT KEELKREENL SLSSRFSSNA ALDTIGAAAG ANADLPKLKD FPRALMRLLR 360
  361 NKLLIFNILS AVFYILGASG FMTFLTKYME VQFHKDAQSA TIIVGPISIM GMVVGLIGSG 420
  421 MVLSKKKPSV SKVLMWNVIV GGISILGQIS YAFLYCPNTF SMTQAGQLNL TSNCNMNCSC 480
  481 EGISYTPVCH EPTDTTFFSA CHAGCRGYNA TSKLYEDCSC VVNDPAPKSA AQRLLNLLQP 540
  541 TPEPELDTTT YFDEYLSGVP LLDDNGDFDD QLLSRTRRST SDSVIRPGIC TKNCNWSFWA 600
  601 FSITSMIVSW FGSSGRVGNV LVNYRAVAHE DKSFAQGLAL MMISLLALIP GPIIFGRLID 660
  661 STCLVWTKTC NGNGNCQLYD QTRFRYSLNF LSCLLTFMGL LFDYLVWYYG RNLDIYGDKE 720
  721 AKEEERANRK DQPITPLLAK KSEQE