YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nAcRalpha-30D-PD
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPLPASLS LFVLLIFLAI IKESCQGPHE KRLLNHLLST YNTLERPVAN ESEPLEVKFG  60
   61 LTLQQIIDVD EKNQILTTNA WLNLDEKNQL LITNLWLSLE WNDYNLRWNE TEYGGVKDLR 120
  121 ITPNKLWKPD VLMYNSADEG FDGTYHTNIV VKHNGSCLYV PPGIFKSTCK IDITWFPFDD 180
  181 QHCEMKFGSW TYDGNQLDLV LNSEDGGDLS DFITNGEWYL LAMPGKKNTI VYACCPEPYV 240
  241 DITFTIQIRR RTLYYFFNLI VPCVLISSMA LLGFTLPPDS GEKLTLGVTI LLSLTVFLNL 300
  301 VAETLPQVSD AIPLLGTYFN CIMFMVASSV VLTVVVLNYH HRTADIHEMP PWIKSVFLQW 360
  361 LPWILRMGRP GRKITRKTIL LSNRMKELEL KERSSKSLLA NVLDIDDDFR HTISGSQTAI 420
  421 GSSASFGRPT TVEEHHTAIG CNHKDLHLIL KELQFITARM RKADDEAELI GDWKFAAMVV 480
  481 DRFCLIVFTL FTIIATVTVL LSAPHIIVQ

Type	Start	End	Confidence
Signal Peptide	1	25	0.81
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	252	0.85
Transmembrane Helix	253	276	0.92
Cytoplasmic	277	283	0.79
Transmembrane Helix	284	305	0.89
Non-Cytoplasmic	306	314	0.73
Transmembrane Helix	315	339	0.87
Cytoplasmic	340	482	0.96
Transmembrane Helix	483	507	0.89
Non-Cytoplasmic	508	509	0.89