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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nompC-PB
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPRGGRGG GRGGGVGRKT PSSLTGPPDE SATPSERATP ASKADSDPKD DSSSNGDKKD  60
   61 MDLFPAPKPP SAGASIRDTA NKVLGLAMKS EWTPIEAELK KLEKYVANVG EDGNHIPLAG 120
  121 VHDMNTGMTP LMYATKDNKT AIMDRMIELG ADVGARNNDN YNVLHIAAMY SREDVVKLLL 180
  181 TKRGVDPFST GGSRSQTAVH LVSSRQTGTA TNILRALLAA AGKDIRLKAD GRGKIPLLLA 240
  241 VESGNQSMCR ELLAAQTAEQ LKATTANGDT ALHLAARRRD VDMVRILVDY GTNVDTQNGE 300
  301 GQTPLHIAAA EGDEALLKYF YGVRASASIA DNQDRTPMHL AAENGHAHVI EILADKFKAS 360
  361 IFERTKDGST LMHIASLNGH AECATMLFKK GVYLHMPNKD GARSIHTAAA YGHTGIINTL 420
  421 LQKGEKVDVT TNDNYTALHI AVESAKPAVV ETLLGFGADV HVRGGKLRET PLHIAARVKD 480
  481 GDRCALMLLK SGASPNLTTD DCLTPVHVAA RHGNLATLMQ LLEDEGDPLY KSNTGETPLH 540
  541 MACRACHPDI VRHLIETVKE KHGPDKATTY INSVNEDGAT ALHYTCQITK EEVKIPESDK 600
  601 QIVRMLLENG ADVTLQTKTA LETAFHYCAV AGNNDVLMEM ISHMNPTDIQ KAMNRQSSVG 660
  661 WTPLLIACHR GHMELVNNLL ANHARVDVFD TEGRSALHLA AERGYLHVCD ALLTNKAFIN 720
  721 SKSRVGRTAL HLAAMNGFTH LVKFLIKDHN AVIDILTLRK QTPLHLAAAS GQMEVCQLLL 780
  781 ELGANIDATD DLGQKPIHVA AQNNYSEVAK LFLQQHPSLV NATSKDGNTC AHIAAMQGSV 840
  841 KVIEELMKFD RSGVISARNK LTDATPLQLA AEGGHADVVK ALVRAGASCT EENKAGFTAV 900
  901 HLAAQNGHGQ VLDVLKSTNS LRINSKKLGL TPLHVAAYYG QADTVRELLT SVPATVKSET 960
  961 PTGQSLFGDL GTESGMTPLH LAAFSGNENV VRLLLNSAGV QVDAATIENG YNPLHLACFG1020
 1021 GHMSVVGLLL SRSAELLQSQ DRNGRTGLHI AAMHGHIQMV EILLGQGAEI NATDRNGWTP1080
 1081 LHCAAKAGHL EVVKLLCEAG ASPKSETNYG CAAIWFAASE GHNEVLRYLM NKEHDTYGLM1140
 1141 EDKRFVYNLM VVSKNHNNKP IQEFVLVSPA PVDTAAKLSN IYIVLSTKEK ERAKDLVAAG1200
 1201 KQCEAMATEL LALAAGSDSA GKILQATDKR NVEFLDVLIE NEQKEVIAHT VVQRYLQELW1260
 1261 HGSLTWASWK ILLLLVAFIV CPPVWIGFTF PMGHKFNKVP IIKFMSYLTS HIYLMIHLSI1320
 1321 VGITPIYPVL RLSLVPYWYE VGLLIWLSGL LLFELTNPSD KSGLGSIKVL VLLLGMAGVG1380
 1381 VHVSAFLFVS KEYWPTLVYC RNQCFALAFL LACVQILDFL SFHHLFGPWA IIIGDLLKDL1440
 1441 ARFLAVLAIF VFGFSMHIVA LNQSFANFSP EDLRSFEKKN RNRGYFSDDD MPTPRPPPVE1500
 1501 NYVDSRFSEF RRKHKDDRPM TPFLAFERLF FAVFGQTTTL DINPMRHLRP EWTEVLFKFV1560
 1561 FGIYLLVSVV VLINLLIAMM SDTYQRIQAR MKKKKRPSLV QMMGIRQASP RTKAGAKWLS1620
 1621 KIKKDSVALS QVHLSPLGSQ ASFSQANQNR IENVADWEAI AKKYRALVGD EEGGSLKDSD1680
 1681 AESGSQEGSG GQQPPAQVGR RAIKATLADT TK

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