YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1090-PB
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	30	0.92
Non-Cytoplasmic	31	123	0.96
Transmembrane Helix	124	148	0.86
Cytoplasmic	149	163	0.93
Transmembrane Helix	164	188	0.86
Non-Cytoplasmic	189	196	0.78
Transmembrane Helix	197	221	0.85
Cytoplasmic	222	227	0.75
Transmembrane Helix	228	247	0.87
Non-Cytoplasmic	248	255	0.57
Transmembrane Helix	256	274	0.77
Cytoplasmic	275	476	0.84
Transmembrane Helix	477	499	0.81
Non-Cytoplasmic	500	509	0.62
Transmembrane Helix	510	532	0.82
Cytoplasmic	533	543	0.75
Transmembrane Helix	544	562	0.91
Non-Cytoplasmic	563	578	0.78
Transmembrane Helix	579	600	0.91
Cytoplasmic	601	608	0.81
Transmembrane Helix	609	629	0.89
Non-Cytoplasmic	630	642	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVRSRSRRA RMWNMGLLFL IYYCVSIYSA KGDTKDGQVL PLDVGALAED AGDAEANGED  60
   61 TPERNSESSV LDTTLAFEPQ ASTQSTPIHG AVPTWRPKRD NCTPPAIEQF PQPLMNKWAR 120
  121 QHGGLILHIL VAVFTFFGLA IVCDEYFVAS LDRLCEELKL SPDVAGATFM AAGSSAPELA 180
  181 TVVIGVFFAK DDIGISGVIG SAVFNIMFVI SVCALCSGTV CQLNWWPLVR DCFFYCVSIL 240
  241 VMLIIIFNDV ISCFESVVML LCYVGYCVAL HFNTELERWA LGLNLPFKLP SKEEQSALVT 300
  301 YKNVPEGSYT QESVGQTQGQ KATDDSETRS AKPQSDYQDY SDPNPTWDPN AAWGDESQPN 360
  361 PVANPPPVDD WGMGHSGQEN MGYHADQPES VVTGDGPPAA VKSGGQVVST QATSAGGNDY 420
  421 YKSTDKQREP RRDPLLRPME GGLPALVSWY VVYPIHFLCK KTMPDCRQEQ YRNWYPFTFL 480
  481 MSMVWISFYS YFMVWMITVI GSTLAIPDTV MGLTFVAAGV SVPDALSSIA VIKEGFGDMA 540
  541 VSNAIGSNVF DILVCLGLPW FIQTAIIKPG SHVNVISKGL AYSTLSLFST VVFLILSTHL 600
  601 NGWKLDKRLG IILMVWYLFF ITLASLYELN VFGYMNPPEC PS