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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPoCk-PB
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNHNKYVKL PQDLDLSFHS DLDLLPDTAA DIDVELDPAA DTDVAALSVN VPASLGLDED  60
   61 DDDEVIIAPG GGGLRLAPTA AEAVAAHRQH HQQHQQCKQL KNQLEQKQIL PKSKICGLGS 120
  121 DSIVETGLTL TPEMLLSTSE SSTHSASEVA GRLQVDVRTG LKWTEAKYRA KIIGHNELLL 180
  181 VAEDPTWKKY IEQFRNPLIL LLLGSALVSV IMKQFDDAVS ITIAILIVVT VAFIQEYRSE 240
  241 KSLEELKKLV PPECHCLREG RLDTFLAREL VPGDIVHLNV GDRVPADVRL FEAVDLSIDE 300
  301 SSFTGETEPA RKITDVLLNN TNVKDHSNMK NIAFMGTLVR CGNGKGIVVS TGERSEFGEV 360
  361 FKMMQAEEAP KTPLQKSMDI LGAQLSFYSF LIIGVIMLLG WLQGKPLSEM FNISVSLAVA 420
  421 AIPEGLPIVV TVTLALGVMR MAKRNSIVKK LPTVETLGCV NVICSDKTGT LTKNEMTATI 480
  481 IITSDGYMAD VTGAGYNDQG EIHIRHCNNV EMAKTNITNL LEIGAVCNNA YIQNGTLLGQ 540
  541 PTEGALVAVA MKNGMYATAE NYVRIQEYPF SSEQKMMAVK CIHKYNNNKE EIFFAKGALE 600
  601 TLLPQCTKYQ FGTQTVPLTK QNEAEFLAEA YEIGRKGLRV LALAKGRSMQ DLIYCGLVGI 660
  661 TDPPRPLVRE SIEMLMQSGV RVKMVTGDAQ ETALAIANLI GIDTIHHQTL SGQEMDQMNE 720
  721 HQLDKVANNV SVFYRVSPRH KLEIVKSLQR SGNIVGMTGD GVNDGVALKK ADIGIAMGKN 780
  781 GTDVCKEAAD MILVNDDFHT IIAAIEEGKG IFYNIRNFVR FQLSTSIAAL ALIALATLMD 840
  841 IANPLNAMQI LWINIIMDGP PAQSLGVEPV DHDVLKQKPR NVKQPMITKS VVVNVLLSAS 900
  901 IIVLGTLWVF QREMADGTLG KTKRDTTMTF TCFVFFDMFN ALSCRSQTKS VFTIGLTTNR 960
  961 MFLLAVAFSI IGQMLVVYFP PLQMVFQTEA LTPYDIFFLV SLTSSVLVVS EIKKWFERTM1020
 1021 ERKMYSTRSE LDFV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle