YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7448-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLDQSKLV SGEPKSGSGD IDIPKTSEEN QLDAIIVEIG QFGHFQVFNY LLLCLPIICN  60
   61 AFYSISYVFT ASDVPHRCNI TMCDGLDSRY EEPFLNFTTP QRHGNWAQCE QYAVRSNLVG 120
  121 QPSCNVSSFD VGQRVPCDAG YKMTDGEKTI AAEFNIFCFD QWKLSMVGTV NNIGQSFLFC 180
  181 FMWFTHTLIA LGLSLHSAQL SGSKFENFSV TGLMQLPGIL MATTLMNWIG RRRSLSSCQF 240
  241 TCAVLLLAVA ATDEGNVPCD LFNPILPCFM ILYFFTSEIF PTNCRNSMLS SCSSMGRFGS 300
  301 MLSPQTTLLI PYYKFAPHLL FALFGFTCSG LVLFFPETTN KVLPTTLAES CPLDKSIPRI 360
  361 KVLKSSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.53
Transmembrane Helix	47	67	0.52
Cytoplasmic	68	172	0.93
Transmembrane Helix	173	195	0.82
Non-Cytoplasmic	196	207	0.77
Transmembrane Helix	208	229	0.87
Cytoplasmic	230	234	0.85
Transmembrane Helix	235	252	0.70
Non-Cytoplasmic	253	260	0.57
Transmembrane Helix	261	280	0.59
Cytoplasmic	281	293	0.59
Transmembrane Helix	294	308	0.37
Non-Cytoplasmic	309	314	0.40
Transmembrane Helix	315	335	0.87
Cytoplasmic	336	367	0.56