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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: siz-PA
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRCDNHKSR RQQLPVPAPL SSSHSNSSSS RSQGHHHHHH HQLHSSNSDL GGSESFLQYC  60
   61 SDSEKRPPPI VVVVGDGRSR VRRVVRTATR HVTVVSLSTR HKETQTHTSH HVTAVSFPQK 120
  121 SLERSGSTQY ELAGAQQPGS ANASTCTDSG SVGGYVYLQN HYAPGAHSSS AAINYPAQQH 180
  181 PQMVYQIQQY PTCHQQQQQQ HLQQQQHLHQ TGAGHYMQVT ATGGGQYHHH HMLHGHGHHA 240
  241 HHHGGAVVIA GSGVGTGLGS GATSVIMQHQ QQQQQQQNMH KKNSIRNGGD VLKRTRAQSA 300
  301 YELSQDLLEK QIELLERKYG GVRARNAAVT IQRAFRHYMM VKKFASITAM AKAEKRLSRR 360
  361 MVVTASSLGL AEEGASSSSA YGSATESQLT EQQQQQQAQQ QQQPRVTIMA GPAGAASPGL 420
  421 SRTPPTRSLS MRERRQLDCS PIPRSQSGAS PASISSSTVS TSALASHPHV NLLHAAEPHY 480
  481 YNAQALPQGA AYYTSYHGSP HDLSYASSAD TSLNASWVNT SGHSPHTPYY SAAQIYMRPK 540
  541 GGSTTPTPSC SGSTGSGSGG SGSGSSKKVP PEVPKRTSSI TAQQQTQLLL LQRQTPPPPS 600
  601 LLRTNGLCKT AENGSLTSVQ SSGSDSSVTS AERNLNSDLG SDRSNSPHTW KRGTALNSSQ 660
  661 QFSTHSADSA GAVSGGGVGV AGGAGVYAAQ MQAAVAAATA AGGMPPADDH AISSHTSAAQ 720
  721 YEQHEQQQHE QQQLQAAAAA AGVAQNYKMS ETIRKRQYRV GLNLFNKKPE KGITYLIRRG 780
  781 FLENTPQGVA RFLITRKGLS RQMIGEYLGN LQNQFNMAVL SCFAMELDLS GRQVDVALRK 840
  841 FQAYFRMPGE AQKIERLMEI FSQRYCECNA DIVGRLRSSD TIFVLAFAII MLNTDLHTPN 900
  901 LKPERRMRVE DFIKNLRGID DCHDIDKDML MGIYDRVKSD EFKPGSDHVT QVMKVQATIV 960
  961 GKKPNLALPH RRLVCYCRLY EIPDVNKKER PGVHQREVFL FNDLLVITKI FSKKKTSVTY1020
 1021 TFRNSFPLCG TVVTLLDMPN YPFCIQLSQK VDGKILITFN ARNEHDRCKF AEDLKESISE1080
 1081 MDEMESLRIE AELERQKSAR NRAPGNAENR DSGVADVEVC PCPYQQGSQA SGEQAPNSAD1140
 1141 NSQQLKRSAL SNSLLDMHEQ FGNEKPQRRG SVGSLDSGMS ISFQSTTTSS ASRENAAAIA1200
 1201 AAANAAAAAK MRFNMPPTAA IATPSNVYAA PGMQAYTHAN FVQQSQAAYM LQQQQMLQQQ1260
 1261 AQMQAQAQAQ AQAQAQAQAQ AQAQAQAQPL TGRIPGRERK ASRTDENGRS TEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle