YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45552173, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMEKSGKFS DYLFAKMGPP TSTELPPKTT ECSDAPVELT GYRRWLSENL MLLVTLSGVL  60
   61 LGVILGLSLR PLNLHGDSIM LISYPGELFM RVLKLMILPL VISSLIAGSA SLNAKMNGKI 120
  121 ALRTLVYFAS TSFFNAALGI ALVLLIHPGN PDLHNADDRS TDRRAVNLLD SLLDLGRNVF 180
  181 PDNLFQASIQ QAHTVYLPKP SILHVFNETM NDTLASGSEA QRLSEDLTED VVLVRDIQYR 240
  241 SGTNTLGIVF FCLVFGTFLG TIGQKGQVVV DFFAAIFERR CPAHYIPLHE RETQGGSADH 300
  301 AICPSNRMQH QHGRNGPIYR SGIDIHCPDE RHGSGIWRAP YGPSDLHGCL HELGQRSECC 360
  361 PGTPSRGADR H

Type	Start	End	Confidence
Cytoplasmic	1	49	0.97
Transmembrane Helix	50	72	0.90
Non-Cytoplasmic	73	91	0.89
Transmembrane Helix	92	113	0.90
Cytoplasmic	114	123	0.86
Transmembrane Helix	124	146	0.92
Non-Cytoplasmic	147	244	0.94
Transmembrane Helix	245	263	0.69
Cytoplasmic	264	371	0.70