YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220951604, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	200	0.99
Transmembrane Helix	201	222	0.94
Cytoplasmic	223	232	0.78
Transmembrane Helix	233	252	0.88
Non-Cytoplasmic	253	279	0.82
Transmembrane Helix	280	297	0.82
Cytoplasmic	298	307	0.63
Transmembrane Helix	308	327	0.88
Non-Cytoplasmic	328	336	0.85
Transmembrane Helix	337	360	0.86
Cytoplasmic	361	379	0.84
Transmembrane Helix	380	400	0.94
Non-Cytoplasmic	401	418	0.88
Transmembrane Helix	419	438	0.94
Cytoplasmic	439	536	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGSATLLVV ALALLLGPAS TAGKSDPGMV DVLVTTDLPS IREQRPLLAN TKIYAQIKGC  60
   61 TSNVESNLTI TFRLTEHPCI FDDRTLQAIA QNATLQKNAT INNVITEITR TYPCNGLIVL 120
  121 AINKDKVVEG SAIPTPEPKH PMLEHKHPLS PTTNPIASVK EDGIYEIEVN IAAGPSAQFS 180
  181 AVVHIEFLGP HGFISAIDWP FLPFYLIMCI VYVIFGIIWL FVSFAQWRDL LRIQFWIGGV 240
  241 ILLGMLEKAF FYAEYQTLTN KGVAVQHAEL VAEFVSCAKR TLARMLVIIM SLGFGIVKPR 300
  301 LGPMLHRVVG VGTLYFVLAC VESYLRITNV KTDRSELLVA SIPLAVLDTG ICWWIFTSLV 360
  361 QTTRTLRLRR NMVKLSLYRH FTNTLIFAVI ASVIFMLFAL RLRRVENCTP GWRDIWVDTG 420
  421 FWHILFSVLL LVIMILWRPT NNNQRYAFTP LLDNPEDEDD EDEEDQFVAD AYGVKMRGQN 480
  481 GTPKTSTTSR NATTTEEDDL RWVEENIPSS MADSALPILD SDEEIINTKF EVSKMQ