YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG15406-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.97
Transmembrane Helix	19	39	0.95
Non-Cytoplasmic	40	62	0.92
Transmembrane Helix	63	84	0.93
Cytoplasmic	85	91	0.89
Transmembrane Helix	92	111	0.94
Non-Cytoplasmic	112	118	0.77
Transmembrane Helix	119	140	0.93
Cytoplasmic	141	150	0.78
Transmembrane Helix	151	169	0.94
Non-Cytoplasmic	170	174	0.69
Transmembrane Helix	175	196	0.90
Cytoplasmic	197	268	0.99
Transmembrane Helix	269	290	0.92
Non-Cytoplasmic	291	310	0.88
Transmembrane Helix	311	329	0.97
Cytoplasmic	330	335	0.94
Transmembrane Helix	336	358	0.94
Non-Cytoplasmic	359	374	0.87
Transmembrane Helix	375	398	0.89
Cytoplasmic	399	406	0.85
Transmembrane Helix	407	428	0.89
Non-Cytoplasmic	429	435	0.77
Transmembrane Helix	436	458	0.93
Cytoplasmic	459	469	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISIFKSGI FQWQYRRQLL VSLSATLITF CHGIALGWLS PMLPKLLSPQ ETPLSFYIDV  60
   61 NEASWLGAVI SIGGISGNFS FSYLMNRFGR KVSIYALAVP HTCIWFLFYF AQSIEWLYVA 120
  121 RVFAGLTGGG MFVVLPIFIG EIADNSIRGR LCSFFTLTMN TGIMVGFVVS SHIAYHVIPC 180
  181 AVVGLPVLYV LLATRYPEPP QQLIRWKREE EAEKSLRYYR RCDGPNVSKE EERAYQKHFD 240
  241 EMRLAIQQQN NDTDDNGLSM SDFLTKRSLK ALATGLVLMV ANIFTGTFAF NNYMSNIFDA 300
  301 VHTQLDPNTN TIIIGAVQIL GTLASIYLVD RYGRKILLIV SCAGSGIGTS AFGLYAFYAE 360
  361 EQKVDLSAFS AWLPVTLMAF IIFIANVGVI SVTMVVLVEI LPQKIRAVAT SFCLGCLSFF 420
  421 AFASLKTFPL MMFHLGLAAT MWFCAAVSVI CLFYVVVCLE ETKGRSMYD