YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Lkr-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMDLIEQES RLEFLPGAEE EAEFERLYAA PAEIVALLSI FYGGISIVAV IGNTLVIWVV  60
   61 ATTRQMRTVT NMYIANLAFA DVIIGLFCIP FQFQAALLQS WNLPWFMCSF CPFVQALSVN 120
  121 VSVFTLTAIA IDRHRAIINP LRARPTKFVS KFIIGGIWML ALLFAVPFAI AFRVEELTER 180
  181 FRENNETYNV TRPFCMNKNL SDDQLQSFRY TLVFVQYLVP FCVISFVYIQ MAVRLWGTRA 240
  241 PGNAQDSRDI TLLKNKKKVI KMLIIVVIIF GLCWLPLQLY NILYVTIPEI NDYHFISIVW 300
  301 FCCDWLAMSN SCYNPFIYGI YNEKFKREFN KRFAACFCKF KTSMDAHERT FSMHTRASSI 360
  361 RSTYANSSMR IRSNLFGPAR GGVNNGKPGL HMPRVHGSGA NSGIYNGSSG QNNNVNGQHH 420
  421 QHQSVVTFAA TPGVSAPGVG VAMPPWRRNN FKPLHPNVIE CEDDVALMEL PSTTPPSEEL 480
  481 ASGAGVQLAL LSRESSSCIC EQEFGSQTEC DGTCILSEVS RVHLPGSQAK DKDAGKSLWQ 540
  541 PL

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.96
Transmembrane Helix	38	61	0.90
Cytoplasmic	62	72	0.85
Transmembrane Helix	73	93	0.93
Non-Cytoplasmic	94	108	0.74
Transmembrane Helix	109	131	0.88
Cytoplasmic	132	147	0.96
Transmembrane Helix	148	171	0.89
Non-Cytoplasmic	172	213	0.96
Transmembrane Helix	214	238	0.83
Cytoplasmic	239	258	0.98
Transmembrane Helix	259	280	0.91
Non-Cytoplasmic	281	295	0.86
Transmembrane Helix	296	317	0.65
Cytoplasmic	318	542	0.67