YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8177-PK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	697	0.98
Transmembrane Helix	698	720	0.90
Cytoplasmic	721	731	0.83
Transmembrane Helix	732	753	0.85
Non-Cytoplasmic	754	782	0.81
Transmembrane Helix	783	804	0.89
Cytoplasmic	805	813	0.76
Transmembrane Helix	814	834	0.85
Non-Cytoplasmic	835	897	0.90
Transmembrane Helix	898	919	0.92
Cytoplasmic	920	932	0.93
Transmembrane Helix	933	954	0.88
Non-Cytoplasmic	955	985	0.91
Transmembrane Helix	986	1005	0.96
Cytoplasmic	1006	1025	0.93
Transmembrane Helix	1026	1046	0.88
Non-Cytoplasmic	1047	1051	0.63
Transmembrane Helix	1052	1071	0.68
Cytoplasmic	1072	1085	0.78
Transmembrane Helix	1086	1105	0.86
Non-Cytoplasmic	1106	1110	0.60
Transmembrane Helix	1111	1132	0.86
Cytoplasmic	1133	1155	0.86
Transmembrane Helix	1156	1175	0.89
Non-Cytoplasmic	1176	1180	0.72
Transmembrane Helix	1181	1199	0.59
Cytoplasmic	1200	1233	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSSASGRE NNVRKLSFLG FNTKKKDNSQ LPIGSRKKNS IRTNDLNIEE DSEYESQTEP  60
   61 LNNAQNYDDI PEDFPLVSER AGHGDHSDNS VDEKHVQFGG KKKIPPSLSY DEQPTDQSHE 120
  121 RKRRRSRHQY YRQRKFSHQD SVEPKNKLEE NGDAGARRIS VQPEDTALEE ADLNELRSHR 180
  181 SDDPRALRRH KIHHSSIKLR ELPQITISPF TNKKPEVDHS PHEIFVQLDE LTGVGEDREW 240
  241 KETARWIKYE EDVEEGSDRW GKPHVASLSF HSLLNLRRCL ETGVVLLDLN EKDLPAVAYR 300
  301 VVEQMVIEDL IDINDKPSVM RSLLLRHRHV NEHQGVLPFT KRKYNSYTSL QFLWMGADSA 360
  361 HQPYQQAQPP PRNLAKARRS ICVTSSAPPT AAMLNVATAT AAAAAIDHRR HSTMSYLGNL 420
  421 SGTDDKKIKI MPAAEIGGSK RSNELKIDMK DDMYSSSQED LKKLQNDTIL KRIPAGAEAT 480
  481 TVLVGAVEFL EQPTIAFVRL SEGVLMPTLT EVPVPVRFMF VLLGPRNFDL DYHEVGRSIS 540
  541 TLMANEHFHS IAYKADDRKD LLSAINEFLD DSIVLPPGNW DRHDLLPFEE LKAKKDWIRT 600
  601 RKIKALQVKR DSEMIKIGKD EEKALLEKQT LGAIGFTIGG GDGGGDGDSD DDNGRKKKKP 660
  661 SPLEKTGRLW GGLRNDLKRR MPMYKSDILD GLNTETLAAT IFMYFACLST AITFGGLVSA 720
  721 KTNSWIGISE TLISCSLVGI VFHCLSCQPL VIIGTTGPLL LFDEALMVFC TQHEFDFLSL 780
  781 RVYVGVWLII IALTVSAFEG SVYVRLLTRF TQEIFSALIT LIYIVETFMK LISIYRENPL 840
  841 LSDYNLPPPT LVAHEHATNE SLLNATASVT TNITQMVMNI STTAMPIGPP PLPKNQPNTA 900
  901 LFCTILTLAT FVVAYYLKLF RNSHFLGRNA RRALGDFGVP ISIAIFVLVD YLVPAVYTEK 960
  961 LVVPEGLSPS DPSKRGWYIG FDTSSTWIPF ACVIPALLVY ILIFMESQIS ELIVDKPDRG1020
 1021 LKKGSGLHWD IVLLCLLNCA CGIFGMPWHC AATVRSVTHV SSVTIMSRTH APGESPRIVD1080
 1081 VKEQRLSGFF VCLMIGLSVL MAPLLRLIPM AVLFGVFLYM GVASMSGVQL FERIRLYFMP1140
 1141 VKHYPPTSYV KRLRPWKLHL FTTIQVLCLV LLWSVKSSQF SLAFPFFLIM MVPIRQNLTK1200
 1201 LYKPEEMQAL DGSEMKKNDD DEPDFYEQTN IPA