YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NijA-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLEHITLE MDKVPLGDNK TLVRNTENIS KHSYGGAIDG RTRNTLRVPR AVPETDDDDN  60
   61 DDRPFVKDGN DNPGVDDGLF STVGGNGGNG GNVNVNVPNG GRRPSFSFPG YNGPGFVTIN 120
  121 GVETPIPDVN AYQHKKTLAQ GMMDLALLSA NANQLRYVLE TSSQHPYFYP SLLFISLSII 180
  181 FQIAVGVGLI LNGQYNIKNG HDICRANRIN NYTVSGIFIV TVVNVLISAF TVDRDTVPAL 240
  241 PANTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	170	0.83
Transmembrane Helix	171	191	0.94
Cytoplasmic	192	210	0.80
Transmembrane Helix	211	232	0.89
Non-Cytoplasmic	233	245	0.89