YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NijA-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLEHITLE MDKVPLGDNK TLVRNTENIS KHSYGGAIDG RTRNTLRVPR ADGNDNPGVD  60
   61 DGLFSTVGGN GGNGGNVNVN VPNGGRRPSF SFPGYNGPGF VTINGVETPI PDVNAYQHKK 120
  121 TLAQGMMDLA LLSANANQLR YVLETSSQHP YFYPSLLFIS LSIIFQIAVG VGLILNGQYN 180
  181 IKNGHDICRA NRINNYTVSG IFIVTVVNVL ISAFTVDRDT VPALPANTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	154	0.80
Transmembrane Helix	155	175	0.94
Cytoplasmic	176	194	0.78
Transmembrane Helix	195	216	0.88
Non-Cytoplasmic	217	229	0.87