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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Sema-5c-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMLILKLPK MFSQLWLLLI LSLLTLEGPQ PSTGSGYTTK SSVDLLENDS RYISYQDLMS  60
   61 TAKRFYDPET TWYSEMLFDV ARNQVIVGAR DTLYRMSFDL EPLERASWGA TPSEIAMCQA 120
  121 KGQSERWCRN YVRVLHSYGE NQLYACGTNA FQPSCSWRQM ENLTVTGVDS GVVKCPFHPQ 180
  181 ANSTSLLQSN GQLFVGTATD FSGSDVAILR TGVESNKRFL RTKQYNNNWL SGAQFVGSFE 240
  241 AGHFVYFLLR ESAAEHMSCG KVIYSRVARV CKNDVGGGGQ LLRDNWTSFL KARLNCSLPG 300
  301 EYPYYFDEIQ GMTYAESESI LYATFRTSGS SIFGSAVCAY NLSSINAAFD GPFKQQEHSD 360
  361 AAWKTVNTNQ RSQFQCGTSS IGHWLESSRY QLMDEAVQPI GAEPLYHSKL EQFGRLALDI 420
  421 INTKTEQVHV LFVASSGNHI KKLSVKYDGD GVQTCLVELW QADDTGTSSL LNMAYLKVSD 480
  481 SLYLGTDLAL TRIPAQHCSR HVSQSSCLNS MDPYCGWNEL VERCMPQPQD SSVLQHWHQA 540
  541 PQITCPVLNA PIDGGWSTWS PWAVCQQHEQ PDSNCQCRQR SCNNPQPQHG GATCEGISTQ 600
  601 VTNCTQHGGW TEWSAWSPCS QTCGIAVKIR RRTCGNPRPA FGGRTCVGSE QSEMYCRHLP 660
  661 PCPVAKPQSV DGGWGPWGEW SECSAQCGGG FRMRRRECND PAPLNGGMEC PGCRLDYEEC 720
  721 NMQSCQEVRK LSAWTPWLTV TGSGNSSEPH MERRFRFVCR ATSPDPSSVR IGLPKEESRN 780
  781 CHADGSCQRQ VDHDSADSDA ADWSPCSVSC GGGVQQRHRG RGSQSRVCNI HACPAEEQLS 840
  841 SNSLDNELEH GEWGCWSEWS ACSVTCGLGL RRRTRRCLAG HDRLCQGRAL EEQKCEMVPC 900
  901 EDFLGWSAWS EWSSCSSDGI RLRHRRCLVE QPGSMECRGA EFEKTACVPN ECEETQTAST 960
  961 ATLPIVIFVG LLFTVACCLA TYRFTKKRFM LSAEEALNKT TTTTASFDTY PNQYSSLPTK1020
 1021 DYYDQRPKRQ SSFRMPAKTS NLGNGNGTLN RNNMHQNNTP KVLAKTYIDC ESGTIKRQSA1080
 1081 LNNCRSNIDD EKF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle