YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7589-PA, FBpp0...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNLHLSEIF WITLILVLSI WTSVGVKAEE EECPSMADAG SLQQTQLIQR LTHVCRYDRL  60
   61 ERPFEYDSDG KRLPIVVKTR IYVYFLQNLN SDLLQFKMHA LLQLRFQDKR LAYKAFNRSD 120
  121 NILGQKHLSE RLWLPHIFFA NERESSILGT DEKDVLTSLS PEGNVIISTR MQASLYCWMN 180
  181 FQKFPFDQQF CSTVLESWMY NTSDLILEWE PHTPISFDPE MRLTEYNMAQ FWHNTTIVQS 240
  241 DGDNLRHGAF AGNYSSLSFT VNLKREIGFY LLDYYLPSMM IVAISWVSFW LQADASPPRI 300
  301 MLGTSTMLSF ITLSSSQSKN LPKVSYIKVS EVWFLGCTFF IFGSLVEFAF VNTIWRRKEN 360
  361 IELKKVNSKY IIKSTLTPRP ARRQIGGSLS NESRARSCSS LDNIVSSTES VRNGNGTVNQ 420
  421 GFNNYLTVHP NLPIIRTECA EADTVSICSA RTNNDHIVDV DKDKKDTPPT FTTMTPQEIA 480
  481 MWIDRRSRFL FPAMFLAFNA LYWTFVYVL

Type	Start	End	Confidence
Signal Peptide	1	28	0.88
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	268	0.92
Transmembrane Helix	269	290	0.86
Cytoplasmic	291	299	0.67
Transmembrane Helix	300	316	0.81
Non-Cytoplasmic	317	331	0.85
Transmembrane Helix	332	355	0.90
Cytoplasmic	356	488	0.99
Transmembrane Helix	489	506	0.97
Non-Cytoplasmic	507	509	0.75