YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	star1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTWLMMDVL QFVKGEMTAD SEANATNWYN TNESLYTTEL NHRWISGSST IQPEESLYGT  60
   61 DLPTYQHCIA TRNSFADLFT VVLYGFVCII GLFGNTLVIY VVLRFSKMQT VTNIYILNLA 120
  121 VADECFLIGI PFLLYTMRIC SWRFGEFMCK AYMVSTSITS FTSSIFLLIM SADRYIAVCH 180
  181 PISSPRYRTL HIAKVVSAIA WSTSAVLMLP VILYASTVEQ EDGINYSCNI MWPDAYKKHS 240
  241 GTTFILYTFF LGFATPLCFI LSFYYLVIRK LRSVGPKPGT KSKEKRRAHR KVTRLVLTVI 300
  301 SVYILCWLPH WISQVALIHS NPAQRDLSRL EILIFLLLGA LVYSNSAVNP ILYAFLSENF 360
  361 RKSFFKAFTC MNKQDINAQL QLEPSVFTKQ GSKKRGGSKR LLTSNPQIPP LLPLNAGNNN 420
  421 SSTTTSSTTT AEKTGTTGTQ KSCNSNGKVT APPENLIICL SEQQEAFCTT ARRGSGAVQQ 480
  481 TDL

Type	Start	End	Confidence
Non-Cytoplasmic	1	80	0.84
Transmembrane Helix	81	103	0.93
Cytoplasmic	104	113	0.75
Transmembrane Helix	114	135	0.89
Non-Cytoplasmic	136	150	0.79
Transmembrane Helix	151	172	0.81
Cytoplasmic	173	191	0.84
Transmembrane Helix	192	214	0.88
Non-Cytoplasmic	215	244	0.93
Transmembrane Helix	245	268	0.90
Cytoplasmic	269	291	0.97
Transmembrane Helix	292	312	0.93
Non-Cytoplasmic	313	331	0.92
Transmembrane Helix	332	356	0.88
Cytoplasmic	357	483	0.96