YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Indy-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.80
Transmembrane Helix	40	59	0.81
Cytoplasmic	60	68	0.73
Transmembrane Helix	69	96	0.79
Non-Cytoplasmic	97	114	0.77
Transmembrane Helix	115	134	0.93
Cytoplasmic	135	152	0.92
Transmembrane Helix	153	175	0.87
Non-Cytoplasmic	176	227	0.90
Transmembrane Helix	228	251	0.88
Cytoplasmic	252	269	0.89
Transmembrane Helix	270	290	0.94
Non-Cytoplasmic	291	333	0.91
Transmembrane Helix	334	352	0.92
Cytoplasmic	353	372	0.83
Transmembrane Helix	373	393	0.92
Non-Cytoplasmic	394	415	0.88
Transmembrane Helix	416	436	0.85
Cytoplasmic	437	456	0.78
Transmembrane Helix	457	484	0.79
Non-Cytoplasmic	485	499	0.76
Transmembrane Helix	500	521	0.87
Cytoplasmic	522	540	0.80
Transmembrane Helix	541	564	0.91
Non-Cytoplasmic	565	590	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATETTKMIY TPPPLDIKME IEIGEQPQPP VKCSNFFANH WKGLVVFLVP LLCLPVMLLN  60
   61 EGAEFRCMYL LLVMAIFWVT EALPLYVTSM IPIVAFPIMG IMSSDQTCRL YFKDTLVMFM 120
  121 GGIMVALAVE YCNLHKRLAL RVIQIVGCSP RRLHFGLIMV TMFLSMWISN AACTAMMCPI 180
  181 IQAVLEELQA QGVCKINHEP QYQIVGGNKK NNEDEPPYPT KITLCYYLGI AYASSLGGCG 240
  241 TIIGTATNLT FKGIYEARFK NSTEQMDFPT FMFYSVPSML VYTLLTFVFL QWHFMGLWRP 300
  301 KSKEAQEVQR GREGADVAKK VIDQRYKDLG PMSIHEIQVM ILFIFMVVMY FTRKPGIFLG 360
  361 WADLLNSKDI RNSMPTIFVV VMCFMLPANY AFLRYCTRRG GPVPTGPTPS LITWKFIQTK 420
  421 VPWGLVFLLG GGFALAEGSK QSGMAKLIGN ALIGLKVLPN SVLLLVVILV AVFLTAFSSN 480
  481 VAIANIIIPV LAEMSLAIEI HPLYLILPAG LACSMAFHLP VSTPPNALVA GYANIRTKDM 540
  541 AIAGIGPTII TIITLFVFCQ TWGLVVYPNL NSFPEWAQIY AAAALGNKTH