YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45446996, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHFCACEDV TSSDLLYIKT MGPSAILTKM PNITNEFSSR IFSSFRILPS SKPKTNGSLK  60
   61 RSQNATNLSY SSSEISNQRR VRRKAAADML SRNISMILEN LLKRYEQSQL PTHGQGVPTV 120
  121 VQTNILIRSM GPVSELDMDY SMDCYFRQYW RDKRLSFKGP IKSLSLSIKM LDKIWRPDTY 180
  181 FYNGKHSQIH MITVPNKLLR LDQNGGILYS MRLTIKATCP MELQNFPMDR QSCPLVIGSY 240
  241 GYINQQLIYE WKNQDDAVSF VPGMTLNQFD LISMMHRNFT TVYVPCILIV VLSWVSFWIH 300
  301 REATSDRVSL CVTSVLTLST ISLDSRTDLP KVKYATALDW FLLMSFLYCI ATLLEFAGVH 360
  361 YFTKLGSGES PQLEDQWEDI CIANSLSDHA GEVDGDGEAD ADPFADEDSS NGSENDDNEA 420
  421 GASESVESKS GVCVCNKNDA LGLEYEVSLQ NSLAGAGFLK RNAIFCPTYN DPSYILPNTM 480
  481 ERTTQTEPPA VSRLHQMWMC LKSDNSFRKQ RERNAAAQKS EQGGANCYVN SVSLIDRVAR 540
  541 IAFPMSFAFL NLLYWWAYGM YKKEFSWSNM KS

Type	Start	End	Confidence
Cytoplasmic	1	278	0.53
Transmembrane Helix	279	300	0.89
Non-Cytoplasmic	301	339	0.41
Transmembrane Helix	340	362	0.81
Cytoplasmic	363	537	0.52
Transmembrane Helix	538	558	0.82
Non-Cytoplasmic	559	572	0.54