YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0300833, FBp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.79
Transmembrane Helix	42	57	0.61
Non-Cytoplasmic	58	77	0.47
Transmembrane Helix	78	99	0.75
Cytoplasmic	100	107	0.53
Transmembrane Helix	108	128	0.68
Non-Cytoplasmic	129	168	0.60
Transmembrane Helix	169	191	0.87
Cytoplasmic	192	256	0.89
Transmembrane Helix	257	277	0.84
Non-Cytoplasmic	278	290	0.85
Transmembrane Helix	291	312	0.92
Cytoplasmic	313	441	0.97
Transmembrane Helix	442	463	0.94
Non-Cytoplasmic	464	471	0.87
Transmembrane Helix	472	495	0.85
Cytoplasmic	496	566	0.81
Transmembrane Helix	567	589	0.89
Non-Cytoplasmic	590	641	0.62
Transmembrane Helix	642	664	0.88
Cytoplasmic	665	767	0.57
Transmembrane Helix	768	788	0.89
Non-Cytoplasmic	789	806	0.51
Transmembrane Helix	807	827	0.71
Cytoplasmic	828	836	0.61
Transmembrane Helix	837	857	0.85
Non-Cytoplasmic	858	906	0.70
Transmembrane Helix	907	928	0.76
Cytoplasmic	929	969	0.83
Transmembrane Helix	970	988	0.62
Non-Cytoplasmic	989	1018	0.66
Transmembrane Helix	1019	1042	0.91
Cytoplasmic	1043	1090	0.68
Transmembrane Helix	1091	1112	0.84
Non-Cytoplasmic	1113	1128	0.62
Transmembrane Helix	1129	1149	0.82
Cytoplasmic	1150	1158	0.63
Transmembrane Helix	1159	1177	0.72
Non-Cytoplasmic	1178	1222	0.66
Transmembrane Helix	1223	1242	0.93
Cytoplasmic	1243	1311	0.74
Transmembrane Helix	1312	1337	0.86
Non-Cytoplasmic	1338	1851	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGPKKEENP PGGGPTSLFI LTEDNPIRKY TRFIIEWPPF EYAVLLTIIA NCVVLALEEH  60
   61 LPGGDKTVLA QKLEKTEAYF LCIFCVEASL KILALGLVLH KHSYLRNIWN IMDFFVVVTG 120
  121 FMTQYPQIGP EVDLRTLRAI RVLRPLKLVS GIPSLQVVLK SIIKAMAPLL QIGLLVLFAI 180
  181 VIFAIIGLEF YSGALHKTCY SLEDPNKLVK EGESETPCNT DNILEKATGS FVCNNTTSMC 240
  241 LEKWEGPNSG ITSFDNIGFA MLTVFQCITM EGWTAILYWT NDALGSAFNW IYFVPLIVIG 300
  301 SFFMLNLVLG VLSGEFSNER NRVERRMEFQ KCRFRAMFQT AMVSYLDWIT QAEEVILAEE 360
  361 RTTEEEKMHI MEARRRNAAK RKKLKSLGKS KSTDTEEEEA EEDYGDDGYL KTRSKPQGSC 420
  421 TGFWRAEKRF RFWIRHTVKT QWFYWFVIVL VFLNTVCVAV EHYGQPSFLT EFLYYAEFIF 480
  481 LGLFMSEMFI KMYALGPRIY FESSFNRFDC VVISGSIFEV IWSEVKGGSF GLSVLRALRL 540
  541 LRIFKVTKYW SSLRNLVISL LNSMRSIISL LFLLFLFILI FALLGMQLFG GQFNLPGGTP 600
  601 ETNFNTFPIA LLTVFQILTG EDWNEVMYQG IISQGGAQKG MIYSIYFIVL VLFGNYTLLN 660
  661 VFLAIAVDNL ANAQELTAAE EEQVEEDKEK QLQELEKEME ALQADGVHVE NGDGAVAPSK 720
  721 SKGKKKEEEK KEEEEVTEGP KPMLPYSSMF ILSPTNPIRR GAHWVVNLPY FDFFIMVVIS 780
  781 MSSIALAAED PVRENSRRNK ILNYFDYAFT GVFTIEMLLK IVDLGVILHP GSYLREFWNI 840
  841 MDAVVVICAA VSFGFDMSGS SAGQNLSTIK SLRVLRVLRP LKTIKRVPKL KAVFDCVVNS 900
  901 LKNVVNILIV YILFQFIFSV IGVQLFNGKF FYCTDESKHT SAECQGSYFK YEEDELLPKQ 960
  961 ELRVWKPRAF HYDNVAAAML TLFAVQTGEG WPQVLQHSMA ATYEDRGPIQ NFRIEMSIFY1020
 1021 IVYFIVFPFF FVNIFVALII ITFQEQGEAE LQDGEIDKNQ KSCIDFTIGA RPLERYMPKN1080
 1081 RNTFKYKVWR IVVSTPFEYF IMMLIVFNTL LLMMKYHNQG DMYEKSLKYI NMGFTGMFSV1140
 1141 ETVLKIIGFG VKNFFKDPWN IFDLITVLGS IVDALWMEFG HDDSNSINVG FLRLFRAARL1200
 1201 IKLLRQGYTI RILLWTFVQS FKALPYVCLL IAMLFFIYAI IGMQVFGNIK LGTVENSITR1260
 1261 HNNFQSFIQG VMLLFRCATG EAWPNIMLAC LKGKACDDDA EKAPGEYCGS TLAYAYFVSF1320
 1321 IFFCSFLMLN LFVAVIMDNF DYLTRDSSIL GAHHLDEFVR IWAEYDPNAT GKIHYTEMYD1380
 1381 MLKNMDPPLG FGNKCPNRLA YKKLIRMNMP LDDELRVQFT TTLFALIREN LSIKMRAPEE1440
 1441 MDQADMELRE TITNIWPLQA KKMLNLLVPP SDQLNKGKLS VGKIYAGFLI LESWRSTRFG1500
 1501 QLDSGMPMLE LQDASRHPSQ ESLTGADAGH LHPGHSYMNG HRRSPSLRHN GSPLARSPSP1560
 1561 RRRGHQYIHH DIGFSDTVSN VVEMVKETRH PRHGNSHPRY PRGSWSASTS PARSPSPSRY1620
 1621 GGHLSRSKRT QLPYPTYGTT SLCQRSRSPS PARLQEMRER DRLGYGIDMG VTHVQHSYPT1680
 1681 LASRRAGIGR RLPPTPSKPS TLQLKPTNIN FPKLNASPTH THHSTPHSVH SLPHHRDLLR1740
 1741 DPRDMYYSSR ERERDRERLR DRDRDRDRDR LHEYDLRYEY RDRERELYER ERDREREVER1800
 1801 ERLEYIAPLS FEQALAMGRT GRVLPSPVLN GFKPKSGLNP RHSDSDEEDW C