YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1275-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPALINFKV LYVLTQLCGL TMIVLVATWI GQHFGGLAGT SNPGVEFNWH PLFMTIGFIY  60
   61 LYGNSILIYR GFRTTRKKTL KLTHAGIHMG AFILTVIALK TVFDSHNLAN PPIPNMYSLH 120
  121 SWLGLSAVIV FSLQYVAGFV AFLAPGLREN YRIAMMPLHI YFGLFGFVLA IASALMGITE 180
  181 KAIFAIKTPA YSTLPPAGVL ANVIGVMYVV FGALVVYLAT EPSYKRKPIP EDTALLNSSS 240
  241 VNE

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	31	0.93
Non-Cytoplasmic	32	48	0.91
Transmembrane Helix	49	72	0.86
Cytoplasmic	73	81	0.90
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	121	0.92
Transmembrane Helix	122	144	0.92
Cytoplasmic	145	157	0.85
Transmembrane Helix	158	178	0.93
Non-Cytoplasmic	179	196	0.89
Transmembrane Helix	197	219	0.93
Cytoplasmic	220	243	0.98