YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vap-33-1-PD
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRNNSALP LVFKIKTTAP KRYCVRPNIG KIIPFRSTQV EICLQPFVYD QQEKNKHKFM  60
   61 VQSVLAPMDA DLSDLNKLWK DLEPEQLMDA KLKCVFEMPT AEANAENTSG GGAVGGGTGA 120
  121 AGGGSAGANT SSASAEALES KPKLSSEDKF KPSNLLETSE SLDLLSGEIK ALRECNIELR 180
  181 RENLHLKDQI TRFRSSPAVK QVNEPYAPVL AEKQIPVFYI AVAIAAAIVS LLLGKFFL

Type	Start	End	Confidence
Cytoplasmic	1	214	0.54
Transmembrane Helix	215	237	0.87
Non-Cytoplasmic	238	238	0.56