YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vap-33-1-PA
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSLFDLPL TIEPEHELRF VGPFTRPVVT IMTLRNNSAL PLVFKIKTTA PKRYCVRPNI  60
   61 GKIIPFRSTQ VEICLQPFVY DQQEKNKHKF MVQSVLAPMD ADLSDLNKLW KDLEPEQLMD 120
  121 AKLKCVFEMP TAEALESKPK LSSEDKFKPS NLLETSESLD LLSGEIKALR ECNIELRREN 180
  181 LHLKDQITRF RSSPAVKQVN EPYAPVLAEK QIPVFYIAVA IAAAIVSLLL GKFFL

Type	Start	End	Confidence
Cytoplasmic	1	211	0.56
Transmembrane Helix	212	234	0.87
Non-Cytoplasmic	235	235	0.59