YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13937102
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTEPAQLA DGEHLSGYAS SSNSVRYLDD RHPLDYLDLG TVHALNTTAI NTSDLNETGS  60
   61 RPLDPVLIDR FLSNRAVDSP WYHMLISMYG VLIVFGALGN TLVVIAVIRK PIMRTARNLF 120
  121 ILNLAISDLL LCLVTMPLTL MEILSKYWPY GSCSILCKTI AMLQALCIFV STISITAIAF 180
  181 DRYQVIVYPT RDSLQFVGAV TILAGIWALA LLLASPLFVY KELINTDTPA LLQQIGLQDT 240
  241 IPYCIEDWPS RNGRFYYSIF SLCVQYLVPI LIVSVAYFGI YNKLKSRITV VAVQASSAQR 300
  301 KVERGRRMKR TNCLLISIAI IFGVSWLPLN FFNLYADMER SPVTQSMLVR YAICHMIGMS 360
  361 SACSNPLLYG WLNDNFRKEF QELLCRCSDT NVALNGHTTG CNVQAAARRR RKLGAELSKG 420
  421 ELKLLGPGGA QSGTAGGEGG LAATDFMTGH HEGGLRSAIT ESVALTDHNP VPSEVTKLMP 480
  481 R

Type	Start	End	Confidence
Non-Cytoplasmic	1	84	0.96
Transmembrane Helix	85	108	0.89
Cytoplasmic	109	118	0.92
Transmembrane Helix	119	141	0.92
Non-Cytoplasmic	142	159	0.85
Transmembrane Helix	160	180	0.93
Cytoplasmic	181	193	0.89
Transmembrane Helix	194	215	0.90
Non-Cytoplasmic	216	257	0.92
Transmembrane Helix	258	280	0.92
Cytoplasmic	281	310	0.96
Transmembrane Helix	311	332	0.89
Non-Cytoplasmic	333	350	0.87
Transmembrane Helix	351	372	0.85
Cytoplasmic	373	481	0.91