YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	capaR-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSTDPTFS ELNASFTNTP DTLFATSVSS DPSHGFGEED YACGTFNCSP KEFVAFVLGP  60
   61 QTLPLYKAVL ITIIFGGIFI TGVVGNLLVC IVIIRHSAMH TATNYYLFSL AVSDLLYLLF 120
  121 GLPTEVFLYW HQYPDLFGMP FCKIRAFISE ACTYVSVFTI VAFSMERFLA ICHPLHLYAM 180
  181 VGFKRAIRII TALWIVSFIS AIPFGLLSDI QYLNYPLDHS RIEESAFCSM SPKIVNEIPV 240
  241 FEVSFCIFFV IPMILIILLY GRMGAKIRSR TNQKLGVQQG TNNRETRNSQ MRKKTVIRML 300
  301 AAVVITFFVC WFPFHLQRLI FLYAKNMDNY LDINEALFSI AGFAYYVSCT VNPIVYSVMS 360
  361 RRYRVAFREL LCGKAVGAYY NSGFARDHSS FRESSAYDRV HSVHVRASQH PNKFETDSSS 420
  421 ANRVLIKKTY SLPLPKNADS TVLSTTDIVI VLENSHTVCE EPKVENDIWI ENEETCI

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.94
Transmembrane Helix	68	94	0.87
Cytoplasmic	95	104	0.80
Transmembrane Helix	105	124	0.90
Non-Cytoplasmic	125	145	0.83
Transmembrane Helix	146	165	0.86
Cytoplasmic	166	185	0.81
Transmembrane Helix	186	207	0.91
Non-Cytoplasmic	208	239	0.94
Transmembrane Helix	240	261	0.93
Cytoplasmic	262	295	0.96
Transmembrane Helix	296	315	0.96
Non-Cytoplasmic	316	335	0.92
Transmembrane Helix	336	358	0.89
Cytoplasmic	359	477	0.94