YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53933206, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRENQSHMT EFLLLGLTSN PKQQVWLFAS FLAMYLVNVI GNSVIIASIQ RDARLHTPMY  60
   61 FFLSNLSLVD ICFTTVIVPQ MLVNLLTQRK TILFAQCLTQ MYFFVAFGIT DSFLLAAMAI 120
  121 DRYVAICNPL HYNTVMSPRR CRLLVVASWA VSHLHSLTHT ILMGRLSFCG PNVIHHFFCD 180
  181 VQPLLTLSCS DTSINELLAF TEGSVVIMSP FIFIVVSYIY ITRTVLRVPS GEGRYKVFST 240
  241 CGSHLTVVAL FYGTIISVYI RPSSTYSVTK DRVVTVIYTV VTPMLNPFIY SLRNKDMKQA 300
  301 LRKLAKRTE

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.87
Transmembrane Helix	25	47	0.90
Cytoplasmic	48	58	0.77
Transmembrane Helix	59	82	0.85
Non-Cytoplasmic	83	100	0.77
Transmembrane Helix	101	120	0.87
Cytoplasmic	121	140	0.79
Transmembrane Helix	141	163	0.78
Non-Cytoplasmic	164	202	0.89
Transmembrane Helix	203	222	0.92
Cytoplasmic	223	236	0.87
Transmembrane Helix	237	260	0.84
Non-Cytoplasmic	261	273	0.87
Transmembrane Helix	274	292	0.83
Cytoplasmic	293	309	0.84