YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYN1L_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLSELQNP LLPRSPTHLH RPYPYPEAPP GWSCQEQLYS FLLGGAGPAR AHQLLDPGSL  60
   61 QLAVEAWYRP SCLLGRDKVK EPKAGSCETS FTEAREPLAG PAEEGSEPGQ AAEDVTIHTV 120
  121 SYGVQEELQG QEDSQEEESD GTSSESECED AFLTLPPRDH LGLTLFSMLC CFWPLGIAAF 180
  181 YFSQGTSKAI SKGDFRLAST TSRRALFLAT LSIAVGAGLY VAVVVALAAY MSQNGHG

Type	Start	End	Confidence
Non-Cytoplasmic	1	161	0.89
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	204	0.87
Transmembrane Helix	205	229	0.93
Non-Cytoplasmic	230	237	0.82