YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DNAJB12
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNKDEAER CISIALKAIQ SNQPDRALRF LEKAQRLYPT PRVRALIESL NQKPQTAGDQ  60
   61 PPPTDTTHAT HRKAGGTDAP SANGEAGGES TKGYTAEQVA AVKRVKQCKD YYEILGVSRG 120
  121 ASDEDLKKAY RRLALKFHPD KNHAPGATEA FKAIGTAYAV LSNPEKRKQY DQFGDDKSQA 180
  181 ARHGHGHGDF HRGFEADISP EDLFNMFFGG GFPSSNVHVY SNGRMRYTYQ QRQDRRDNQG 240
  241 DGGLGVFVQL MPILILILVS ALSQLMVSSP PYSLSPRPSV GHIHRRVTDH LGVVYYVGDT 300
  301 FSEEYTGSSL KTVERNVEDD YIANLRNNCW KEKQQKEGLL YRARYFGDTD MYHRAQKMGT 360
  361 PSCSRLSEVQ ASLHG

Type	Start	End	Confidence
Cytoplasmic	1	241	0.64
Transmembrane Helix	242	267	0.75
Non-Cytoplasmic	268	375	0.83