YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31873990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.53
Transmembrane Helix	42	65	0.77
Non-Cytoplasmic	66	101	0.45
Transmembrane Helix	102	125	0.89
Cytoplasmic	126	133	0.71
Transmembrane Helix	134	154	0.69
Non-Cytoplasmic	155	167	0.80
Transmembrane Helix	168	188	0.92
Cytoplasmic	189	208	0.93
Transmembrane Helix	209	232	0.89
Non-Cytoplasmic	233	246	0.83
Transmembrane Helix	247	266	0.91
Cytoplasmic	267	274	0.86
Transmembrane Helix	275	294	0.95
Non-Cytoplasmic	295	315	0.91
Transmembrane Helix	316	336	0.92
Cytoplasmic	337	342	0.86
Transmembrane Helix	343	365	0.89
Non-Cytoplasmic	366	381	0.86
Transmembrane Helix	382	403	0.90
Cytoplasmic	404	412	0.88
Transmembrane Helix	413	434	0.92
Non-Cytoplasmic	435	439	0.89
Transmembrane Helix	440	464	0.77
Cytoplasmic	465	478	0.81
Transmembrane Helix	479	501	0.93
Non-Cytoplasmic	502	520	0.92
Transmembrane Helix	521	542	0.93
Cytoplasmic	543	658	0.99
Transmembrane Helix	659	681	0.94
Non-Cytoplasmic	682	693	0.85
Transmembrane Helix	694	714	0.86
Cytoplasmic	715	870	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNLPAENL TIAVNMTKTL PTAVTHGFNS TNDPPSMSIT RLFPALLECF GIVLCGYIAG  60
   61 RANVITSTQA KGLGNFVSRF ALPALLFKNM VVLNFSNVDW SFLYSILIAK ASVFFIVCVL 120
  121 TLLVASPDSR FSKAGLFPIF ATQSNDFALG YPIVEALYQT TYPEYLQYIY LVAPISLMML 180
  181 NPIGFIFCEI QKWKDTQNAS QNKIKIVGLG LLRVLQNPIV FMVFIGIAFN FILDRKVPVY 240
  241 VENFLDGLGN SFSGSALFYL GLTMVGKIKR LKKSAFVVLI LLITAKLLVL PLLCREMVEL 300
  301 LDKGDSVVNH TSLSNYAFLY GVFPVAPGVA IFATQFNMEV EIITSGMVIS TFVSAPIMYV 360
  361 SAWLLTFPTM DPKPLAYAIQ NVSFDISIVS LISLIWSLAI LLLSKKYKQL PHMLTTNLLI 420
  421 AQSIVCAGMM IWNFVKEKNF VGQILVFVLL YSSLYSTYLR TGLLAISLFL LKKRERVQIP 480
  481 VGIIIISGWG IPALLVGVLL ITGKHNGDSI DSAFFYGKEQ MITTAVTLFC SILIAGISLM 540
  541 CMNQTAQAGS YEGFDQSQSH KVVEPGNTAF EESPAPVNEP ELFTSSIPET SCCSCSMGNG 600
  601 ELHCPSIEPI ANTSTSEPVI PSFEKNNHCV SRCNSQSRIL AQEEEQYLQS GDQQLTRHVL 660
  661 LCLLLIIGLF ANLSSCLWWL FNQEPGRLYV ELQFFCAVFN FGQGFISFGI FGLDKHLIIL 720
  721 PFKRRLEFLW NNKDTAENRD SPVSEEIKMT CQQFIHYHRD LCIRNIVKER RCGAKTSAGT 780
  781 FCGCDLVSWL IEVGLASDRG EAVIYGDRLV QGGVIQHITN EYEFRDEYLF YRFLQKSPEQ 840
  841 SPPAINANTL QQERYKEIEH SSPPSHSPKT