YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|339920
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDHAWSFLK DFLAGAVAAA VSKTAVAPIE RVKLLLQVQH ASKQISAEKQ YKGIIDCVVR  60
   61 IPKEQGFLSF WRGNLANVIR YFPTQALNFA FKDKYKQLFL GGVDRHKQFW RYFAGNLASG 120
  121 GAAGATSLCF VYPLDFARTR LAADVGRRAQ REFHGLGDCI IKIFKSDGLR GLYQGFNVSV 180
  181 QGIIIYRAAY FGVYDTAKGM LPDPKNVHIF VSWMIAQSVT AVAGLLSYPF DTVRRRMMMQ 240
  241 SGRKGADIMY TGTVDCWRKI AKDEGAKAFF KGAWSNVLRG MGGAFVLVLY DEIKKYV

Type	Start	End	Confidence
Cytoplasmic	1	111	0.68
Transmembrane Helix	112	134	0.65
Non-Cytoplasmic	135	208	0.63
Transmembrane Helix	209	230	0.91
Cytoplasmic	231	297	0.85